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Clinical Epidemiology
Category Analysis Name 작업 OPEN KoGES User Manual Scenario Clinical Epidemiology Study 3 - Data Clinical Epidemiology Study 2 - Data Clinical Epidemiology Study 1 - Data Visualization Graphics-Bar Plot Graphics-Density Plot Graphics-Box Plot Graphics-Bubble Chart Graphics-Scatter Plot Graphics-Scatter Matrix Graphics-Index Plot Graphics-Dot Plot Graphics-Mean Plot Graphics-Histogram Graphics-QQ Plot Graphics-XY Plot Variable Transformation Variable Transformation The statistical analysis manual can be downloaded from the notice board. -
Genome Analysis
Category Analysis Name Program Used 작업 Scenario Clinical Epidemiology & Genome Study 6 - Data PLINK, plink2, GCTA Clinical Epidemiology & Genome Study 5 - Data PLINK, plink2, GCTA Clinical Epidemiology & Genome Study 4 - Data PLINK, plink2 Clinical Epidemiology & Genome Study 3 - Data R, PLINK, plink2, BCFtools, Eagle, Minimac4 Clinical Epidemiology & Genome Study 2 - Data PLINK, plink2 Clinical Epidemiology & Genome Study 1 - Data PLINK, plink2, BCFtools, Eagle, Minimac4 ForGWAS Data Quality Control (QC) PLINK Principal Component Analysis (PCA) & QC R, plink2 GWAS Logistic Regression PLINK Linear Regression PLINK Multinomial Logistic Regression R Linear Mixed Models (LMM) BOLT-LMM, ONE-TOOL, R Rare Variant Analysis (Gene-based) R PRS Polygenic Risk Score (PRS) Model LDpred, PLINK Other Analysis SNP Annotation SnpSift Heritability (h2) Analysis GCTA, LDAK, LDSC Linkage Disequilibrium (LD) Analysis PLINK Plotting Multi-Dimensional Scaling (MDS) Plot R QQ Plot R Manhattan Plot R 
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